Bao, Y., Z. Zhang, W. Zhao, J. Xiao, S. He, G. Zhang, Y. Li, G. Zhao, R. Chen, et al. 2024. Database resources of the national genomics data center, China national center for bioinformation in 2024. Nucleic Acids Res. 52(D1) : D18-D32. https://doi.org/10.1093/NAR/GKAD1078
10.1093/nar/gkad107838018256PMC10767964Bolger, A. M., M. Lohse, and B. Usadel. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinf. 30(15) : 2114-2120. https://doi.org/10.1093/BIOINFORMATICS/BTU170
10.1093/bioinformatics/btu17024695404PMC4103590Cao, Y., K. Zhang, H. Yu, S. Chen, D. Xu, H. Zhao, Z. Zhang, Y. Yang, X. Gu, X. Liu, H. Wang, Y. Jing, Y. Mei, X. Wang, V. Lefebvre, W. Zhang, Y. Jin, D. An, R. Wang, P. Bosland, X. Li, I. Paran, B. Zhang, G. Giuliano, L. Wang, and F. Cheng. 2022. Pepper variome reveals the history and key loci associated with fruit domestication and diversification. Mol. Plant 15(11) : 1744-1758. https://doi.org/10.1016/j.molp.2022.09.021
10.1016/j.molp.2022.09.02136176193Ha, S.-K., J.-U. Jeung, J.-M. Jeong, J. Kim, and Y. Mo. 2020. Genetic and agronomic analysis of a recombinant inbred line population to map quantitative trait loci for blast resistance and select promising lines in rice. KOREAN J. CROP Sci. 65(3) : 172-181. https://doi.org/10.7740/KJCS.2020.65.3.172
Henriques, D., A. Wallberg, J. Chávez-Galarza, J. S. Johnston, M. T. Webster, and M. A. Pinto. 2018. Whole genome SNP-associated signatures of local adaptation in honeybees of the Iberian Peninsula. Sci. Rep. 8(1) : 11145. https://doi.org/10.1038/s41598-018-29469-5
10.1038/s41598-018-29469-530042407PMC6057950Hunter, J. D. 2007. Matplotlib: A 2D graphics environment. Comput. Sci. Eng. 9(3) : 90-95. https://doi.org/10.1109/MCSE.2007.55
10.1109/MCSE.2007.55Kim, S., M. Park, S. I. Yeom, Y. M. Kim, J. M. Lee, H. A. Lee, E. Seo, J. Choi, K. Cheong, K. T. Kim, K. Jung, G. W. Lee, S. K. Oh, C. Bae, S. B. Kim, H. Y. Lee, S. Y. Kim, M. S. Kim, B. C. Kang, Y. D. Jo, H. B. Yang, H. J. Jeong, W. H. Kang, J. K. Kwon, C. Shin, J. Y. Lim, J. H. Park, J. H. Huh, J. S. Kim, B. D. Kim, O. Cohen, I. Paran, M. C. Suh, S. B. Lee, Y. K. Kim, Y. Shin, S. J. Noh, J. Park, Y. S. Seo, S. Y. Kwon, H. A. Kim, J. M. Park, H. J. Kim, S. B. Choi, P. W. Bosland, G. Reeves, S. H. Jo, B. W. Lee, H. T. Cho, H. S. Choi, M. S. Lee, Y. Yu, Y. d. Choi, B. S. Park, A. van Deynze, H. Ashrafi, T. Hill, W. T. Kim, H. S. Pai, H. K. Ahn, I. Yeam, J. J. Giovannoni, J. K. C. Rose, I. Sørensen, S. J. Lee, R. W. Kim, I. Y. Choi, B. S. Choi, J. S. Lim, Y. H. Lee, and D. Choi. 2014. Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species. Nat. Genet. 46(3) : 270-278. https://doi.org/10.1038/ng.2877
10.1038/ng.287724441736Li, H. and R. Durbin. 2010. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinf. (Oxford, England), 26(5) : 589-595. https://doi.org/10.1093/BIOINFORMATICS/BTP698
10.1093/bioinformatics/btp69820080505PMC2828108Liu, F., J. Zhao, H. Sun, C. Xiong, X. Sun, X. Wang, Z. Wang, R. Jarret, J. Wang, B. Tang, H. Xu, B. Hu, H. Suo, B. Yang, L. Ou, X. Li, S. Zhou, S. Yang, Z. Liu, F. Yuan, Z. Pei, Y. Ma, X. Dai, S. Wu, Z. Fei, and X. Zou. 2023. Genomes of cultivated and wild Capsicum species provide insights into pepper domestication and population differentiation. Nat. Commun. 14(1) : https://doi.org/10.1038/S41467-023-41251-4
10.1038/s41467-023-41251-437679363PMC10484947McKenna, A., M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis, A. Kernytsky, K. Garimella, D. Altshuler, S. Gabriel, M. Daly, and M. A. DePristo. 2010. The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20(9) : 1297-1303. https://doi.org/10.1101/GR.107524.110
10.1101/gr.107524.11020644199PMC2928508Sayers, E. W., E. E. Bolton, J. Rodney Brister, K. Canese, J. Chan, D. C. Comeau, R. Connor, K. Funk, C. Kelly, S. Kim, T. Madej, A. Marchler-Bauer, C. Lanczycki, S. Lathrop, Z. Lu, F. Thibaud-Nissen, T. Murphy, L. Phan, Y. Skripchenko, T. Tse, J. Wang, R. Williams, B. W. Trawick, K. D. Pruitt, and S. T. Sherry. 2022. Database resources of the national center for biotechnology information. Nucleic Acids Res. 50(D1) : D20-D26. https://doi.org/10.1093/NAR/GKAB1112
10.1093/nar/gkab111234850941PMC8728269Seol, Y. J., T. H. Lee, D. S. Park, and C. K. Kim. 2015. NABIC: A new access portal to search, visualize, and share agricultural genomics data. Evol. Bioinf. 12 : 51-58. https://doi.org/10.4137/EBO.S34493
10.4137/EBO.S3449326848255PMC4737523Song, K., J. H. Kim, G. Y. Yoon, H. C. Kim, S. Shin, W. C. Yim, K.-H. Kim, and B.-M. Lee. 2015. Distribution of genetic variants in Korean soybeans. Korean J. Crop Sci. 60(2) : 224-230. https://doi.org/10.7740/kjcs.2015.60.2.224
10.7740/kjcs.2015.60.2.224Stephan, W. 2019. Selective Sweeps. Genetics 211(1) : 5-13. https://doi.org/10.1534/genetics.118.301319
10.1534/genetics.118.30131930626638PMC6325696The pandas development team. (2020, February). pandas - Python Data Analysis Library. https://doi.org/10.5281/zenodo.3509134
Waskom, M. L. 2021. seaborn: statistical data visualization. J. Open Source Softw. 6(60) : 3021. https://doi.org/10.21105/JOSS.03021
10.21105/joss.03021You, H. J., E. J. Kang, I. J. Kang, J.-M. Kim, S.-T. Kang, S. Lee. 2023. Identification of a locus associated with resistance to phytophthora sojae in the soybean elite line 'CheonAl.' KOREAN J. CROP Sci. 68(3) : 134-146. https://doi.org/10.7740/KJCS.2023.68.3.134
Zou, K., K.-S. Kim, D. Lee, and T.-H. Jun. 2020. Genetic diversity and population structure of peanut (Arachis hypogaea L.) accessions from five different origins. KOREAN J. CROP Sci. 65(4) : 447-456. https://doi.org/10.7740/KJCS.2020.65.4.447
- Publisher :The Korean Society of Crop Science
- Publisher(Ko) :한국작물학회
- Journal Title :The Korean Journal of Crop Science
- Journal Title(Ko) :한국작물학회지
- Volume : 69
- No :4
- Pages :400-406
- Received Date : 2024-11-04
- Accepted Date : 2024-11-13
- DOI :https://doi.org/10.7740/kjcs.2024.69.4.400