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2014 Vol.59, Issue 3 Preview Page

Original Research Article

Transcription Factor for Gene Function Analysis in Maize

옥수수 유전자 기능 분석을 위한 전사인자의 이해

Jun-Cheol Moon1
,
Jae Yoon Kim2
,
Seong-Bum Baek3
,
Young-Up Kwon3
,
Kitae Song4
,
Byung-Moo Lee4*
문 준철1
,
김 재윤2
,
백 성범3
,
권 영업3
,
송 기태4
,
이 병무4*
1Agriculture and Life Sciences Research Institute, Kangwon Nat’l Univ., Chuncheon 200-701, Korea
2College of Life Science and Biotechnology, Korea Univ., Seoul 136-713, Korea
3National Institute of Crop Science, RDA, Suwon 441-837, Korea
4Plant Molecular Genetic Lab., Dep. Of Life Science, Dongguk Univ.-Seoul, Seoul 100-715, Korea
1강원대학교 농업생명과학연구원
2고려대학교 생명과학대학 생명공학부
3농촌진흥청 국립식량과학원
4동국대학교 생명과학과
*Corresponding Author
30 September 2014. pp. 263-281
PDF XML Citation
Abstract

Transcription factors are essential for the regulation of gene expression in plant. They are binding to either enhancer or promoter region of DNA adjacent to the gene and are related to basal transcription regulation, differential enhancement of transcription, development, response to intercellular signals or environment, and cell cycle control. The mechanism in controlling gene expression of transcription can be understood through the assessment of the complete sequence for the maize genome. It is possible that the maize genome encodes 4,000 or more transcription factors because it has undergone whole duplication in the past. Previously, several transcription factors of maize have been characterized. In this review article, the transcription factors were selected using Pfam database, including many family members in comparison with other family and listed as follows: ABI3 / VP1, AP2/EREBP, ARF, ARID, AS2, Aux/IAA, BES1, bHLH, bZIP, C2C2-CO-like, C2C2-Dof, C2C2-GATA, C2C2- YABBY, C2H2, E2F/DP, FHA, GARP-ARR-B, GeBP, GRAS, HMG, HSF, MADS, MYB, MYB-related, NAC, PHD, and WRKY family. For analyzing motifs, each amino acid sequence has been aligned with ClustalW and the conserved sequence was shown by sequence logo. This review article will contribute to further study of molecular biological analysis and breeding using the transcription factor of maize as a strategy for selecting target gene.

Keywords
maize
transcription factor
domain
motif
sequence logo
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Information
  • Publisher :The Korean Society of Crop Science
  • Publisher(Ko) :한국작물학회
  • Journal Title :The Korean Journal of Crop Science
  • Journal Title(Ko) :한국작물학회지
  • Volume : 59
  • No :3
  • Pages :263-281
  • Received Date : 2013-09-23
  • Revised Date : 2014-01-21
  • Accepted Date : 2014-05-13
  • DOI :https://doi.org/10.7740/kjcs.2014.59.3.263
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