Distribution of Genetic Variants in Korean Soybeans

Kitae Song; Jeong Hoon Kim; Gi Yong Yoon; Hyo Chul Kim; Seungho Shin; Won Cheol Yim; Kyung-Hee Kim; Byung-Moo Lee

doi:10.7740/kjcs.2015.60.2.224

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2015 Vol.60, Issue 2 Preview Page Next Page

Original Research Article

Distribution of Genetic Variants in Korean Soybeans

30 June 2015. pp. 224-230

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Abstract

Next generation sequencing technologies provide opportunities to reveal the genetic variants and differentially expressedgenes. The genetic variants are closely relevance to understanding of genes and phenotypic differences related to agronomic characteristics among cultivars. In this study, we conducted RNA-seq using two Korean soybean accessions, including Daewon and Hwangkeum, by using next generation sequencing against Williams 82 genome as reference. A number of variants such assingle nucleotide variants (SNV), multiple nucleotide variants (MNV), insertion/deletion (InDel) and replacement, was 34,411 and 55,544 in Daewon and Hwangkeum, respectively. Among these variants, 9,611 nonsynonymous variants were detected within 4,290 genes in Daewon and 13,225 non-synonymous variants were located on 5,672 genes in Hwangkeum. The distribution of nonsynonymous variants and expression values of genes can serve as invaluable resource for genotyping and study of traits within genes for soybean improvements.

Keywords

soybean

genetic variants

RNA-seq

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Information

Publisher :The Korean Society of Crop Science
Publisher(Ko) :한국작물학회
Journal Title :The Korean Journal of Crop Science
Journal Title(Ko) :한국작물학회지
Volume : 60
No :2
Pages :224-230
Received Date : 2015-05-15
Accepted Date : 2015-05-18
DOI :https://doi.org/10.7740/kjcs.2015.60.2.224

The Korean Journal of Crop Science ISSN:0252-9777(Print) 2287-8432(Online) 한국작물학회지

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